Bioinformatics

synthEHRella 完整教學

2026-06-108 min read Bioinformatics Tutorial

synthEHRella 完整教學 Repository: https://github.com/chenxran/synthEHRella Stars: 18 | Language: Python | License: MIT Tags: EHR, benchmark, synthetic 論文: Chen X, Wu Z et al. (2025). Generating synthetic electronic health record data: a methodological scoping review with benchmarking on phenotype data and open-source...

Synthetic Data Generator (SDG) 完整教學

2026-06-1010 min read Bioinformatics Tutorial

Synthetic Data Generator (SDG) 完整教學 Repository: https://github.com/SDM-TIB/Synthetic-Data-Generator Stars: 3 | Language: Python | License: MIT Tags: breast-cancer, csv, data-generator, process-based, rdf, sql 最後更新: 2025-11-20 2. 核心架構 2.1 系統架構圖 graph TB subgraph Input["輸入參數"] N["患者數量-n patients"] P["突變機率-p...

Synthetic-CT-generation-from-MRI-using-3D-transformer-based-denoising-diffusion-model 完整教學

2026-06-109 min read Bioinformatics Tutorial

Synthetic-CT-generation-from-MRI-using-3D-transformer-based-denoising-diffusion-model 完整教學 Repository: https://github.com/shaoyanpan/Synthetic-CT-generation-from-MRI-using-3D-transformer-based-denoising-diffusion-model Stars: 67 | Fork: 8 | License: MIT Tags: diffusion, 3D-transformer, MRI-CT 論文: Medical Physics...

T-SYNTH (tsynth-release) 完整教學

2026-06-108 min read Bioinformatics Tutorial

T-SYNTH (tsynth-release) 完整教學 Repository: https://github.com/DIDSR/tsynth-release Stars: 6 | Tags: breast-cancer, medical-imaging, synthetic-data 授權: CC0 1.0 Universal (Creative Commons Zero; 公眾領域貢獻) 主要語言: Jupyter Notebook / Python 資料集: https://huggingface.co/datasets/didsr/tsynth 論文: https://arxiv.org/abs/2507.04038...

TabGAN (Tabular-data-generation) 完整教學

2026-06-109 min read Bioinformatics Tutorial

TabGAN (Tabular-data-generation) 完整教學 Repository: https://github.com/Diyago/Tabular-data-generation Stars: 570 | Forks: 83 | License: Apache-2.0 Language: Python | PyPI: tabgan Tags: GAN, tabular-data, adversarial-filtering, deep-learning, machine-learning Paper: Tabular GANs for uneven distribution (arXiv:2010.00638)...

TemporAI 完整教學

2026-06-109 min read Bioinformatics Tutorial

TemporAI 完整教學 Repository: https://github.com/vanderschaarlab/temporai Stars: 130 | Forks: 24 | Language: Python | License: Apache-2.0 Tags: machine-learning, medicine, time-series, automl Homepage: https://www.temporai.vanderschaar-lab.com/ Paper: arXiv:2301.12260 Last Updated: 2026-05-28 2. 核心架構 2.1 整體架構圖 graph TB...

Treeffuser 完整教學

2026-06-1010 min read Bioinformatics Tutorial

Treeffuser 完整教學 Repository: https://github.com/blei-lab/treeffuser Stars: 56 | Forks: 10 | License: MIT Paper: NeurIPS 2024 — arXiv:2406.07658 Tags: diffusion-models, gradient-boosting, probabilistic-prediction, tabular-data, lightgbm, heteroscedasticity 最後更新: 2026-04-28 作者群: David Blei Lab @ Columbia...

VICTRE 完整教學

2026-06-1011 min read Bioinformatics Tutorial

VICTRE 完整教學 Repository: https://github.com/DIDSR/VICTRE Stars: 74 | Tags: virtual-clinical-trial, FDA, imaging License: CC0-1.0 (Creative Commons Zero v1.0 Universal) Primary Language: Python / C / CUDA Forks: 16 | Last Updated: 2026-06-09 自動化管線: https://github.com/DIDSR/VICTRE_PIPELINE (29 stars) FDA RST 編號:...

Bio Agent 生態系完整比較論述

2026-06-0843 min read Bioinformatics Tutorial

Bio Agent 生態系完整比較論述 34 個 GitHub 專案的綜合分析與比較日期：2026-06-08 版本：v2.0（擴充版）資料來源：GitHub 公開 repository、arXiv 論文、各專案 README 與教學文件 2. 生態系全覽 (Ecosystem Overview) 這 34 個專案並非各自獨立——它們形成了一個有清楚層次結構的生態系。最頂層是 AI Scientist framework (AI 科學家框架)，負責端到端的研究自動化；中間層是 multi-agent platform (多代理平台) 和 tool provider (工具提供者)，提供具體的推理與執行能力；...

turbovec 完整教學：基於 TurboQuant 的高效向量搜尋引擎

2026-06-0810 min read Bioinformatics Tutorial

turbovec 完整教學：基於 TurboQuant 的高效向量搜尋引擎 1. 專案定位這是什麼？ turbovec 是一個以 Rust 撰寫、提供 Python bindings 的向量索引引擎。它實作了 Google Research 在 ICLR 2026 發表的 TurboQuant 演算法（arXiv:2504.19874），能將高維 embedding 向量壓縮到每座標 2-4 bits，同時保持接近 Shannon 理論下界的失真率。為什麼重要？在 RAG（Retrieval-Augmented Generation）應用中，向量索引是核心基礎設施。現有方案如 FAISS 需要 codebook 訓...